
-Oncology, e.g. Breast cancer, prostate cancer, acute propyelocytic leukemia (APL)
-CNS, e.g. Sleep disorders, addiction, Alzheimer’s disease, retinal degeneration
-Cardiovascular system, e.g. Pulmonary hypertension, fibrosis, cholestatic regulation
A unique collection of small molecule compounds with annotated activities for Receptors targets
Data sources of annotations : Pharos, ChEMBL 25, PubChem, PubMed, Current Patent Literature (CAS, Integrity)
IDNUMBER – ChemDiv Catalog ID (in some instances the same IDNUMBER might have multiple annotation entries due to multiple data sources or because having activity against multiple similar targets);
UNIPROT – SwissProt and ChEMBL Target accesion ID;
Type – character of the measured activity;
Value – Active compounds selection criteria, included only compounds with reported activities < 5 µM;
pubmed_id – PubMed record entry;
doi, patent_id – journal or patent reference to a publication of original data;
For screening data extracted from PubChem, see column assay_description for entry names PUBCHEM_BIOASSAY
Example of Annotations - an Excel file structure
IDNUMBER | UNIPROT | Target Name | Type | Relation | Value | Units | pubmed_id | doi | patent_id | Target Description | assay_description |
Y042-7692 | Q92731 | Estrogen receptor beta | IC50 | = | 98.7 | nM | US-8552057-B2 | Estrogen receptor beta | Binding Assay: The binding affinity and selectivity of candidate molecules (PanVera Corp.). | ||
Y040-0960 | P03372 | Estrogen receptor alpha | IC50 | = | 2320 | nM | US-8552057-B2 | Estrogen receptor | Binding Assay: The binding affinity and selectivity of candidate molecules (PanVera Corp.). | ||
3882-1710 | O60706 | Sulfonylurea receptor 2 Kir6.2 | Ki | = | 130 | nM | 9464357 | 10.1021/jm970762d | ATP-binding cassette sub-family C member 9 | Binding affinity was determined by displacement of [3H]P1075 from its binding sites in canine cardiac membranes | |
3882-1710 | O60706 | Sulfonylurea receptor 2 Kir6.2 | IC50 | = | 220 | nM | 11356099 | 10.1021/jm000484+ | ATP-binding cassette sub-family C member 9 | Inhibition of human SUR2A/Kir6.2 expressed in Xenopus oocytes | |
8017-2388 | P35869 | Aryl hydrocarbon receptor | EC50 | = | 583.2 | nM | Aryl hydrocarbon receptor | PUBCHEM_BIOASSAY: Luminescence-based cell-based high throughput dose response assay for activators of the Aryl Hydrocarbon Receptor (AHR). | |||
2361-0083 | P10275 | Androgen Receptor | IC50 | = | 3.9 | nM | 15456242 | 10.1021/jm0342515 | Androgen receptor | Inhibition of human androgen receptor expressed in Escherichia coli | |
7165-0212 | P24468 | COUP transcription factor 2 | IC50 | = | 2750 | nM | COUP transcription factor 2 | PubChem BioAssay. Luminescence-based cell-based high throughput dose response assay to identify inhibitors of COUP-TFII (NR2F2). (Class of assay: confirmatory) | |||
6550-0048 | Q9NR96 | Toll-like receptor 9 | IC50 | = | 3122 | nM | Toll-like receptor 9 | PUBCHEM_BIOASSAY: Fluorescence-based cell-based high throughput dose response assay for inhibitors of TLR9-MyD88 binding. |